Sam Buckberry

Sam Buckberry

Postdoctoral Research Fellow in Genome Bioinformatics

Lister Lab

The University of Western Australia

Harry Perkins Institute of Medical Research

Biography

Sam Buckberry is a molecular and computational biologist in the Lister Lab. Sam utilises an integrative approach to data analysis to study the principles and mechanisms of epigenetic gene regulation through combining cutting-edge methods in molecular biology, genomics, and bioinformatics.

Interests
  • Bioinformatics
  • Genomics
  • R programming
  • Data visualisation
  • DNA methylation
  • Stem cell reprogramming
  • Early human development
Education

  • PhD in Medicine (Bioinformatics), 2015

    The University of Adelaide

  • Bachelor of Health Science (Hons), 2011

    The University of Adelaide

  • Bachelor of Science (Biology), 2010

    Flinders University

Recent Publications

Alexandra Grubman, Gabriel Chew, John F Ouyang, Guizhi Sun, Xin Yi Choo, Catriona McLean, Rebecca K Simmons, Sam Buckberry, Dulce B Vargas-Landin, Daniel Poppe, Jahnvi Pflueger, Ryan Lister, Owen J L Rackham, Enrico Petretto, Jose M Polo (2019). A single-cell atlas of entorhinal cortex from individuals with Alzheimer's disease reveals cell-type-specific gene expression regulation. Nature neuroscience.

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Alex de Mendoza, William L Hatleberg, Kevin Pang, Sven Leininger, Ozren Bogdanovic, Jahnvi Pflueger, Sam Buckberry, Ulrich Technau, Andreas Hejnol, Maja Adamska, Bernard M Degnan, Sandie M Degnan, Ryan Lister (2019). Convergent evolution of a vertebrate-like methylome in a marine sponge. Nature ecology & evolution.

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Alex de Mendoza, Amandine Bonnet, Dulce B Vargas-Landin, Nanjing Ji, Hongfei Li, Feng Yang, Ling Li, Koichi Hori, Jahnvi Pflueger, Sam Buckberry, Hiroyuki Ohta, Nedeljka Rosic, Pascale Lesage, Senjie Lin, Ryan Lister (2018). Recurrent acquisition of cytosine methyltransferases into eukaryotic retrotransposons. Nature communications.

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Benjamin T Mayne, Shalem Y Leemaqz, Sam Buckberry, Carlos M Rodriguez Lopez, Claire T Roberts, Tina Bianco-Miotto, James Breen (2018). msgbsR: An R package for analysing methylation-sensitive restriction enzyme sequencing data. Scientific reports.

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Tim Stuart, Sam Buckberry, Ryan Lister (2018). Approaches for the Analysis and Interpretation of Whole Genome Bisulfite Sequencing Data. Epigenome Editing: Methods and Protocols.

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Christian M Nefzger, Fernando J Rossello, Joseph Chen, Xiaodong Liu, Anja S Knaupp, Jaber Firas, Jacob M Paynter, Jahnvi Pflueger, Sam Buckberry, Sue Mei Lim, Brenda Williams, Sara Alaei, Keshav Faye-Chauhan, Enrico Petretto, Susan K Nilsson, Ryan Lister, Mirana Ramialison, David R Powell, Owen J L Rackham, Jose M Polo (2017). Cell Type of Origin Dictates the Route to Pluripotency. Cell reports.

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